Accession
MI0026106
Description
Prunus persica
ppe-MIR395d precursor miRNA
Literature search
4 open access papers mention ppe-MIR395d
(16 sentences)
(16 sentences)
Sequence
4582
reads,
3726.0
reads per million, 20 experiments
auccgugguaauguacuuauuguagaagcugugaugaaaaaagaggaaauauugucaggugucaccgagAGUUCUCUUGACCACUUCAUUgggaaauaauucauucugaucaauuauauaucccaCUGAAGUGUUUGGGGGAACuccugguggcauuugauuuuacaaagaauaacaaagcucuuacaagcuuuccacauauccaccgccauggau
(((((((((...((......(((.(((((((((........((((........((((((((((((((.((((((((((((.(((((((.(((((.((((((.((....)).))))))...))))).))))))).)))))))))))).))))))))))))))...................))))))).))))))..))).....)).)))))))))
(((((((((...((......(((.(((((((((........((((........((((((((((((((.((((((((((((.(((((((.(((((.((((((.((....)).))))))...))))).))))))).)))))))))))).))))))))))))))...................))))))).))))))..))).....)).)))))))))
Structure
aau acuuau -a - augaaaaa -----------gaaauauu a C U --a c u
auccguggu gu ugu gaagcu gug agag gucaggugucaccg gAGUUCUCUUGA CACUUCA Uggga auaauu au c
||||||||| || ||| |||||| ||| |||| |||||||||||||| |||||||||||| ||||||| ||||| |||||| ||
uagguaccg ca aca uuucga cau ucuc uaguuuacgguggu cuCAAGGGGGUU GUGAAGU acccu uauuaa ua u
--c -ccuau cc a -------- gaaacaauaagaaacauuu c U C aua c g
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
chrG1: 27764041-27764256 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from ppe-MIR395d
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppe-miR395d-5p
| Accession | MIMAT0058539 |
| Description | Prunus persica ppe-miR395d-5p mature miRNA |
| Sequence | 70 - AGUUCUCUUGACCACUUCAUU - 90 |
| Evidence |
experimental
unknown |
Mature ppe-miR395d-3p
| Accession | MIMAT0031482 |
| Description | Prunus persica ppe-miR395d-3p mature miRNA |
| Sequence | 126 - CUGAAGUGUUUGGGGGAAC - 144 |
| Evidence |
experimental
Illumina [1] |
References
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