Stem-loop ppe-MIR395e

Accession

MI0026107

Description

Prunus persica ppe-MIR395e precursor miRNA

Literature search

4 open access papers mention ppe-MIR395e
(16 sentences)

Sequence

4537 reads, 3712.0 reads per million, 20 experiments

gucaggugucaccgagaGUUCCCUUGAACACUUCAUUGggaaauaauuaguucugaucuauuauguaucccaCUGAAGUGUUUGGGGGAACUCcugguggcauuugau
((((((((((((((.((((((((((((((((((((.(((((.(((((.((.......)))))))...))))).)))))))))))))))))))).))))))))))))))

Structure

              a                    U     --a     u  uu 
gucaggugucaccg gaGUUCCCUUGAACACUUCA UGgga   auaau ag  c
|||||||||||||| |||||||||||||||||||| |||||   ||||| ||  u
uaguuuacgguggu CUCAAGGGGGUUUGUGAAGU acccu   uauua uc  g
              c                    C     aug     -  ua 

Annotation confidence High

Genome context

chrG1: 27739475-27739582 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppe-MIR395e

Mature ppe-miR395e-5p

• Accession: MIMAT0058540
• Description: Prunus persica ppe-miR395e-5p mature miRNA
• Sequence: 18 - GUUCCCUUGAACACUUCAUUG - 38
• Evidence: experimental ; unknown

Mature ppe-miR395e-3p

• Accession: MIMAT0031483
• Description: Prunus persica ppe-miR395e-3p mature miRNA
• Sequence: 73 - CUGAAGUGUUUGGGGGAACUC - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149