Stem-loop ppe-MIR395f

Accession

MI0026108

Description

Prunus persica ppe-MIR395f precursor miRNA

Literature search

3 open access papers mention ppe-MIR395f
(14 sentences)

Sequence

4866 reads, 3669.0 reads per million, 20 experiments

caucagguguccccuagaGUUUCCUCGAACACUUCAUUAGgaugucuaacucucuuaauuaaacuaauuaagggauaaguuauacuuacagucucuaCUGAAGUGUUUGGGGGAACUCcgggugucauuugaug
(((((((((.((((..((((((((((((((((((((.((((((((.(((((((((((((((...)))))))))))...)))).)).....))).))).)))))))))))))))))))).))).).)))))))))

Structure

         u -   ua                    U   -   -----  c    ---           a 
caucaggug c ccc  gaGUUUCCUCGAACACUUCA UAG gau     gu uaac   ucucuuaauua  
||||||||| | |||  |||||||||||||||||||| ||| |||     || ||||   ||||||||||| a
guaguuuac g ggg  CUCAAGGGGGUUUGUGAAGU auc cug     ca auug   agggaauuaau  
         u u   -c                    C   u   acauu  u    aau           c 

Annotation confidence High

Genome context

chrG1: 27781156-27781289 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppe-MIR395f

Mature ppe-miR395f-5p

• Accession: MIMAT0058541
• Description: Prunus persica ppe-miR395f-5p mature miRNA
• Sequence: 19 - GUUUCCUCGAACACUUCAUUAG - 40
• Evidence: experimental ; unknown

Mature ppe-miR395f-3p

• Accession: MIMAT0031484
• Description: Prunus persica ppe-miR395f-3p mature miRNA
• Sequence: 98 - CUGAAGUGUUUGGGGGAACUC - 118
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149