Stem-loop ppe-MIR395g

Accession

MI0026109

Description

Prunus persica ppe-MIR395g precursor miRNA

Literature search

3 open access papers mention ppe-MIR395g
(14 sentences)

Sequence

4798 reads, 3715.0 reads per million, 20 experiments

uguugucaggugucaccaagaGUUCCCUCACUCACUUCAUUGggaaauaauucuuucugaucaauuauauauccuaCUGAAGUGUUUGGGGGAACUCcugguggcauuugauuuuaca
(((.((((((((((((((.(((((((((((..(((((((.(((((.(((((((.....))...)))))...))))).)))))))..))))))))))).))))))))))))))...)))

Structure

   --u              a           CU       U     --a     ---  u 
ugu   gucaggugucacca gaGUUCCCUCA  CACUUCA UGgga   auaau   uc u
|||   |||||||||||||| |||||||||||  ||||||| |||||   |||||   || u
aca   uaguuuacgguggu CUCAAGGGGGU  GUGAAGU auccu   uauua   ag c
   uuu              c           UU       C     aua     acu  u 

Annotation confidence High

Genome context

chrG1: 27739652-27739769 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppe-MIR395g

Mature ppe-miR395g-5p

• Accession: MIMAT0058542
• Description: Prunus persica ppe-miR395g-5p mature miRNA
• Sequence: 22 - GUUCCCUCACUCACUUCAUUG - 42
• Evidence: experimental ; unknown

Mature ppe-miR395g-3p

• Accession: MIMAT0031485
• Description: Prunus persica ppe-miR395g-3p mature miRNA
• Sequence: 77 - CUGAAGUGUUUGGGGGAACUC - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149