Stem-loop ppe-MIR395j

Accession

MI0026112

Description

Prunus persica ppe-MIR395j precursor miRNA

Literature search

3 open access papers mention ppe-MIR395j
(14 sentences)

Sequence

5508 reads, 3632.0 reads per million, 20 experiments

gucaguuguuccuggaGUUCCCUUGAACACUUCAUUGgggaaauuauaaggguaguucauauguaccuuaauuuauccuaCUGAAGUGUUUGGGGGAACUCuggguaucaucugac
(((((.((..((((((((((((((((((((((((.(((((((((((...(((((.........))))))))))).))))).))))))))))))))))))))))))...)).)))))

Structure

     u  -uu                        U     -      uaa     guu 
gucag ug   ccuggaGUUCCCUUGAACACUUCA UGggg aaauua   gggua   c
||||| ||   |||||||||||||||||||||||| ||||| ||||||   |||||   a
caguc ac   ggguCUCAAGGGGGUUUGUGAAGU auccu uuuaau   uccau   u
     u  uau                        C     a      ---     gua 

Annotation confidence High

Genome context

chrG1: 27754874-27754989 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from ppe-MIR395j

Mature ppe-miR395j-5p

• Accession: MIMAT0058543
• Description: Prunus persica ppe-miR395j-5p mature miRNA
• Sequence: 17 - GUUCCCUUGAACACUUCAUUG - 37
• Evidence: experimental ; unknown

Mature ppe-miR395j-3p

• Accession: MIMAT0031488
• Description: Prunus persica ppe-miR395j-3p mature miRNA
• Sequence: 81 - CUGAAGUGUUUGGGGGAACUC - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149