Stem-loop ppe-MIR395k

Accession

MI0026113

Description

Prunus persica ppe-MIR395k precursor miRNA

Literature search

3 open access papers mention ppe-MIR395k
(14 sentences)

Sequence

5486 reads, 3629.0 reads per million, 20 experiments

ccuggaGUUCCCUUGAACACUUCAUUGggaaaauuauaaggguaguucauauguacccuaauuuauccuaCUGAAGUGUUUGGGGGAACUCuggg
((((((((((((((((((((((((.((((((((((...((((((.........))))))))))).))))).))))))))))))))))))))))))

Structure

                        U     -     aua      guu 
ccuggaGUUCCCUUGAACACUUCA UGgga aaauu   agggua   c
|||||||||||||||||||||||| ||||| |||||   ||||||   a
ggguCUCAAGGGGGUUUGUGAAGU auccu uuuaa   ucccau   u
                        C     a     ---      gua 

Annotation confidence High

Genome context

chrG1: 27779990-27780084 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppe-MIR395k

Mature ppe-miR395k-5p

• Accession: MIMAT0058544
• Description: Prunus persica ppe-miR395k-5p mature miRNA
• Sequence: 7 - GUUCCCUUGAACACUUCAUUG - 27
• Evidence: experimental ; unknown

Mature ppe-miR395k-3p

• Accession: MIMAT0031489
• Description: Prunus persica ppe-miR395k-3p mature miRNA
• Sequence: 71 - CUGAAGUGUUUGGGGGAACUC - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149