Stem-loop ppe-MIR395l

Accession

MI0026114

Description

Prunus persica ppe-MIR395l precursor miRNA

Literature search

3 open access papers mention ppe-MIR395l
(14 sentences)

Sequence

5049 reads, 3793.0 reads per million, 20 experiments

ucaggugucaccuagaGUUCCUCUGACCACUUCAUUGggaaauagucuucuuguaacuauacauccuaCUGAAGUGUUUGGGGGAACUCcagguggcauuuga
(((((((((((((.((((((((((((.(((((((.(((((.(((((.........)))))...))))).))))))).)))))))))))).)))))))))))))

Structure

             a            C       U     --a     cuu 
ucaggugucaccu gaGUUCCUCUGA CACUUCA UGgga   auagu   c
||||||||||||| |||||||||||| ||||||| |||||   |||||   u
aguuuacggugga CUCAAGGGGGUU GUGAAGU auccu   uauca   u
             c            U       C     aca     aug 

Annotation confidence Medium

Genome context

chrG1: 27739824-27739926 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppe-MIR395l

Mature ppe-miR395l-5p

• Accession: MIMAT0058545
• Description: Prunus persica ppe-miR395l-5p mature miRNA
• Sequence: 17 - GUUCCUCUGACCACUUCAUUG - 37
• Evidence: experimental ; unknown

Mature ppe-miR395l-3p

• Accession: MIMAT0031490
• Description: Prunus persica ppe-miR395l-3p mature miRNA
• Sequence: 69 - CUGAAGUGUUUGGGGGAACUC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149