Stem-loop ppe-MIR395m

Accession

MI0026115

Description

Prunus persica ppe-MIR395m precursor miRNA

Literature search

3 open access papers mention ppe-MIR395m
(14 sentences)

Sequence

5472 reads, 3609.0 reads per million, 20 experiments

gucaguuguccccuagaGUUUCCCUGACCACUUCACUGggaucaagcuuuccaaaacccuucaacugagggugaaauuccaugcaugccaucccaCUGAAGUGUUUGGGGGAACUCugguugccaccugac
(((((.((.(..(((((((((((((((.(((((((.((((((((.((........((((((.....))))))..........)).))..)))))).))))))).)))))))))))))))..).)).)))))

Structure

     u  u cc               C       C      --  a  --uuuccaaa      c 
gucag ug c  cuagaGUUUCCCUGA CACUUCA UGggau  ca gc          acccuu a
||||| || |  ||||||||||||||| ||||||| ||||||  || ||          |||||| a
caguc ac g  gguCUCAAGGGGGUU GUGAAGU acccua  gu cg          ugggag c
     c  c uu               U       C      cc  a  uaccuuaaag      u 

Annotation confidence High

Genome context

chrG1: 27720832-27720962 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR395m

Mature ppe-miR395m-5p

• Accession: MIMAT0058546
• Description: Prunus persica ppe-miR395m-5p mature miRNA
• Sequence: 18 - GUUUCCCUGACCACUUCACUG - 38
• Evidence: experimental ; unknown

Mature ppe-miR395m-3p

• Accession: MIMAT0031491
• Description: Prunus persica ppe-miR395m-3p mature miRNA
• Sequence: 96 - CUGAAGUGUUUGGGGGAACUC - 116
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149