Stem-loop ppe-MIR395n

Accession

MI0026116

Description

Prunus persica ppe-MIR395n precursor miRNA

Literature search

3 open access papers mention ppe-MIR395n
(14 sentences)

Sequence

5170 reads, 3645.0 reads per million, 20 experiments

ucaggugucaccuagAGUUCUCUUGACCACUUCAUUgggaaauagucuucuuucgacuauacauucuaCUGAAGUGUUUGGGGGAACUCuagguggcauuuga
((((((((((((((((((((((((((.(((((((.(((((.((((((.......))))))...))))).))))))).))))))))))))))))))))))))))

Structure

                          C       U     --a      uu 
ucaggugucaccuagAGUUCUCUUGA CACUUCA Uggga   auaguc  c
|||||||||||||||||||||||||| ||||||| |||||   ||||||  u
aguuuacgguggauCUCAAGGGGGUU GUGAAGU aucuu   uaucag  u
                          U       C     aca      cu 

Annotation confidence Medium

Genome context

chrG1: 27764648-27764750 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from ppe-MIR395n

Mature ppe-miR395n-5p

• Accession: MIMAT0058547
• Description: Prunus persica ppe-miR395n-5p mature miRNA
• Sequence: 16 - AGUUCUCUUGACCACUUCAUU - 36
• Evidence: experimental ; unknown

Mature ppe-miR395n-3p

• Accession: MIMAT0031492
• Description: Prunus persica ppe-miR395n-3p mature miRNA
• Sequence: 69 - CUGAAGUGUUUGGGGGAACUC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149