Stem-loop ppe-MIR396a

Accession

MI0026118

Description

Prunus persica ppe-MIR396a precursor miRNA

Literature search

6 open access papers mention ppe-MIR396a
(16 sentences)

Sequence

723156 reads, 32602.0 reads per million, 20 experiments

UUCCACAGCUUUCUUGAACGUcugugcccuuucaggaacuaucagauaauuuucaugcaguuccaauagcacaaaaacagUUCAAGAAAGCUGUGAAA
...((((((((((((((((((.(((((.......((((((..((((......)).)).))))))....)))))...)).))))))))))))))))...

Structure

UUC                -  --c     ccuuuca      au  -  ua 
   CACAGCUUUCUUGAAC GU   ugugc       ggaacu  ca ga  a
   |||||||||||||||| ||   |||||       ||||||  || ||   
   GUGUCGAAAGAACUUg ca   acacg       ccuuga  gu cu  u
AAA                a  aaa     ---auaa      -c  a  uu 

Annotation confidence High

Genome context

chrG1: 40254306-40254403 [-]

Mature ppe-miR396a-5p

• Accession: MIMAT0031494
• Description: Prunus persica ppe-miR396a-5p mature miRNA
• Sequence: 1 - UUCCACAGCUUUCUUGAACGU - 21
• Evidence: experimental ; Illumina [1]

Mature ppe-miR396a-3p

• Accession: MIMAT0058548
• Description: Prunus persica ppe-miR396a-3p mature miRNA
• Sequence: 81 - UUCAAGAAAGCUGUGAAA - 98
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149