Stem-loop ppe-MIR396b

Accession

MI0026119

Description

Prunus persica ppe-MIR396b precursor miRNA

Literature search

6 open access papers mention ppe-MIR396b
(17 sentences)

Sequence

2156213 reads, 95785.0 reads per million, 20 experiments

gucaugcuuUUCCACAGCUUUCUUGAACUUcaauucuuugcugucuaagcuuaucgcuuucaagauuagcuagcgccaucgaagCUCAAGAAAGCUGUGGGAGAAcauggc
((((((.(((((((((((((((((((.((((.......((((.....((((.(((........))).)))))))).....)))).))))))))))))))))))).))))))

Structure

      c                   A    aauucuu    gucua    u   gcu 
gucaug uuUUCCACAGCUUUCUUGA CUUc       ugcu     agcu auc   u
|||||| ||||||||||||||||||| ||||       ||||     |||| |||    
cgguac AGAGGGUGUCGAAAGAACU gaag       gcga     ucga uag   u
      A                   C    --cuacc    -----    u   aac 

Annotation confidence High

Genome context

chrG7: 21072692-21072802 [+]

Mature ppe-miR396b-5p

• Accession: MIMAT0031495
• Description: Prunus persica ppe-miR396b-5p mature miRNA
• Sequence: 10 - UUCCACAGCUUUCUUGAACUU - 30
• Evidence: experimental ; Illumina [1]

Mature ppe-miR396b-3p

• Accession: MIMAT0058549
• Description: Prunus persica ppe-miR396b-3p mature miRNA
• Sequence: 85 - CUCAAGAAAGCUGUGGGAGAA - 105
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149