Stem-loop ppe-MIR397

Accession

MI0026120

Description

Prunus persica ppe-MIR397 precursor miRNA

Literature search

5 open access papers mention ppe-MIR397
(9 sentences)

Sequence

9050 reads, 169.0 reads per million, 20 experiments

aaggguggcucaaaaucaaucaugcagaugcagauuaugagagcaguggagguuccagauugaagaaacaUCAUUGAGUGCAGCGUUGAUGaauugaaauucuuucgaaauuuCAUCAGCGCUGCACCCAAUUAuguuucuauccaauuuuggcaaaguacuggcuggcuucucuggucuucuucuuucuuuuagcccuuuu
(((((.((((.((((..((((.(((....)))))))..((((.(((.((((((((((((((..((((((((.((((.((((((((((((((((((((((...))))))...)))))))))))))))).)))).))))))))..(((....)))...))).))))..)))))))))).))))........)))))))))))))

Structure

     u    c    ucaaucaugcagaugcagauuau    g   u       --    -   -------------ga        C    A                ---      u 
aaggg ggcu aaaa                       gaga cag ggagguu  ccag auu               agaaacaU AUUG GUGCAGCGUUGAUGaa   uugaaa  
||||| |||| ||||                       |||| ||| |||||||  |||| |||               |||||||| |||| ||||||||||||||||   |||||| u
uuuuc ccga uuuu                       uucu guc ucuucgg  gguc uga               ucuuuguA UAAC CACGUCGCGACUACuu   agcuuu  
     -    -    ---------------cuuucuuc    g   -       uc    a   aacgguuuuaaccua        U    C                uaa      c 

Annotation confidence Medium

Genome context

chrG4: 1619282-1619483 [+]

Mature ppe-miR397-5p

• Accession: MIMAT0031496
• Description: Prunus persica ppe-miR397-5p mature miRNA
• Sequence: 71 - UCAUUGAGUGCAGCGUUGAUG - 91
• Evidence: experimental ; Illumina [1]

Mature ppe-miR397-3p

• Accession: MIMAT0058550
• Description: Prunus persica ppe-miR397-3p mature miRNA
• Sequence: 114 - CAUCAGCGCUGCACCCAAUUA - 134
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149