Stem-loop ppe-MIR399b

Accession

MI0026122

Description

Prunus persica ppe-MIR399b precursor miRNA

Literature search

5 open access papers mention ppe-MIR399b
(7 sentences)

Sequence

2955 reads, 589.0 reads per million, 20 experiments

ugaauaacaGGGCAAUUUUCCUUUGGCAGAAauaauuauauauauuuggugcauuuacucucaaucucaaguaccggcaccgaaugcuuUCUGCCAAAGGAGAAUUGCCCugccauuca
(((((..(((((((((((((((((((((((((..........((((((((((...((((..........))))...)))))))))).)))))))))))))))))))))))))..)))))

Structure

     aa                         uaauuauaua          auu    cuca 
ugaau  caGGGCAAUUUUCCUUUGGCAGAAa          uauuuggugc   uacu    a
|||||  |||||||||||||||||||||||||          ||||||||||   ||||     
acuua  guCCCGUUAAGAGGAAACCGUCUuu          guaagccacg   auga    u
     cc                         ---------c          gcc    acuc 

Annotation confidence High

Genome context

chrG4: 3186487-3186605 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR399b

Mature ppe-miR399b-5p

• Accession: MIMAT0058552
• Description: Prunus persica ppe-miR399b-5p mature miRNA
• Sequence: 10 - GGGCAAUUUUCCUUUGGCAGAA - 31
• Evidence: experimental ; unknown

Mature ppe-miR399b-3p

• Accession: MIMAT0031498
• Description: Prunus persica ppe-miR399b-3p mature miRNA
• Sequence: 90 - UCUGCCAAAGGAGAAUUGCCC - 110
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149