Stem-loop ppe-MIR399c

Accession

MI0026123

Description

Prunus persica ppe-MIR399c precursor miRNA

Literature search

4 open access papers mention ppe-MIR399c
(5 sentences)

Sequence

163 reads, 14.0 reads per million, 16 experiments

gcauacuugucaaguaagcaaagcagucaUAGGGCUCCUCCUUCUUGGCAggcacuggugacugaugcagcuacaaauguaaaaucacuuucauugaccUGCCAAAGAAGAGUUGCCCUAcgauugcuuuggcuuaaugaaauuugc
(((......(((..((((((((((((((.((((((..(((.(((((((((((((..(((((....((((........))))...))))).....)).)))))).))))))))..)))))).))))))))).))))).)))....)))

Structure

   uacuug   ag     -         a      UC   C     -      -  ---cu     cuga    gcu 
gca      uca  uaagc aaagcaguc UAGGGC  CUC UUCUU GGCAgg ca     gguga    ugca   a
|||      |||  ||||| ||||||||| ||||||  ||| ||||| |||||| ||     |||||    ||||    
cgu      agu  auucg uuucguuag AUCCCG  GAG AAGAA CCGUcc gu     ucacu    augu   c
   --uuaa   -a     g         c      UU   -     A      a  uacuu     -aaa    aaa 

Annotation confidence Not enough data

Genome context

chrG3: 1446492-1446638 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR399c

Mature ppe-miR399c-5p

• Accession: MIMAT0058553
• Description: Prunus persica ppe-miR399c-5p mature miRNA
• Sequence: 30 - UAGGGCUCCUCCUUCUUGGCA - 50
• Evidence: experimental ; unknown

Mature ppe-miR399c-3p

• Accession: MIMAT0031499
• Description: Prunus persica ppe-miR399c-3p mature miRNA
• Sequence: 100 - UGCCAAAGAAGAGUUGCCCUA - 120
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149