Stem-loop ppe-MIR399g

Accession

MI0026127

Description

Prunus persica ppe-MIR399g precursor miRNA

Literature search

4 open access papers mention ppe-MIR399g
(5 sentences)

Sequence

309 reads, 23.0 reads per million, 16 experiments

uaagcaaagcagucauaGGGCUCCUCUUUCUUGGCAGGcacuggugacugaugcagcuacaaauguacaaucacuuucauugaccUGCCAAAGAAGAGUUGCCCUAcgauugcuuuggcuua
((((((((((((((.((((((..((((((.((((((((((..(((((.((.((((........)))))).))))).....)).)))))))).))))))..)))))).))))))))).)))))

Structure

     -         a      UC      C        -  ---cu     c  a    gcu 
uaagc aaagcaguc uaGGGC  CUCUUU UUGGCAGG ca     gguga ug ugca   a
||||| ||||||||| ||||||  |||||| |||||||| ||     ||||| || ||||    
auucg uuucguuag AUCCCG  GAGAAG AACCGUcc gu     ucacu ac augu   c
     g         c      UU      A        a  uacuu     a  -    aaa 

Annotation confidence High

Genome context

chrG3: 1605120-1605241 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR399g

Mature ppe-miR399g-5p

• Accession: MIMAT0058557
• Description: Prunus persica ppe-miR399g-5p mature miRNA
• Sequence: 18 - GGGCUCCUCUUUCUUGGCAGG - 38
• Evidence: experimental ; unknown

Mature ppe-miR399g-3p

• Accession: MIMAT0031503
• Description: Prunus persica ppe-miR399g-3p mature miRNA
• Sequence: 86 - UGCCAAAGAAGAGUUGCCCUA - 106
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149