Stem-loop ppe-MIR399i

Accession

MI0026129

Description

Prunus persica ppe-MIR399i precursor miRNA

Literature search

4 open access papers mention ppe-MIR399i
(5 sentences)

Sequence

307 reads, 24.0 reads per million, 18 experiments

ucaaauaagcaaagcagucauaGGGCUCCUCUUUCUUGGCAGGcacuggugacugaugcagcuacaaauguacaaucacuuucauugaccUGCCAAAGAAGAGUUGCCCUAcaauugcuuuggcuuaauga
.....(((((((((((((..((((((..((((((.((((((((((..(((((.((.((((........)))))).))))).....)).)))))))).))))))..))))))..)))))))).)))))....

Structure

ucaaa     -        ca      UC      C        -  ---cu     c  a    gcu 
     uaagc aaagcagu  uaGGGC  CUCUUU UUGGCAGG ca     gguga ug ugca   a
     ||||| ||||||||  ||||||  |||||| |||||||| ||     ||||| || ||||    
     auucg uuucguua  AUCCCG  GAGAAG AACCGUcc gu     ucacu ac augu   c
-agua     g        ac      UU      A        a  uacuu     a  -    aaa 

Annotation confidence High

Genome context

chrG3: 1614836-1614966 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR399i

Mature ppe-miR399i-5p

• Accession: MIMAT0058558
• Description: Prunus persica ppe-miR399i-5p mature miRNA
• Sequence: 23 - GGGCUCCUCUUUCUUGGCAGG - 43
• Evidence: experimental ; unknown

Mature ppe-miR399i-3p

• Accession: MIMAT0031505
• Description: Prunus persica ppe-miR399i-3p mature miRNA
• Sequence: 91 - UGCCAAAGAAGAGUUGCCCUA - 111
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149