Stem-loop ppe-MIR399k

Accession

MI0026131

Description

Prunus persica ppe-MIR399k precursor miRNA

Literature search

4 open access papers mention ppe-MIR399k
(5 sentences)

Sequence

616 reads, 25.0 reads per million, 16 experiments

uuucaaauaagcaaagcagucaUAGGGCUUCUCUUUCUUGGCAggcacuggugacugaugcagcuacaaauguacaaucacuuucauugaccUGCCAAAGAAGAGUUGCCCUAcgauugcuuuuggcuuaaugaaa
.((((..((((((((((((((.((((((..((((((.((((((((((..(((((.((.((((........)))))).))))).....)).)))))))).))))))..)))))).)))))))))..))))).)))).

Structure

u    aa     --         a      UU      C        -  ---cu     c  a    gcu 
 uuca  uaagc  aaagcaguc UAGGGC  CUCUUU UUGGCAgg ca     gguga ug ugca   a
 ||||  |||||  ||||||||| ||||||  |||||| |||||||| ||     ||||| || ||||    
 aagu  auucg  uuucguuag AUCCCG  GAGAAG AACCGUcc gu     ucacu ac augu   c
a    -a     gu         c      UU      A        a  uacuu     a  -    aaa 

Annotation confidence High

Genome context

chrG1: 43095221-43095356 [-]

Mature ppe-miR399k-5p

• Accession: MIMAT0058560
• Description: Prunus persica ppe-miR399k-5p mature miRNA
• Sequence: 23 - UAGGGCUUCUCUUUCUUGGCA - 43
• Evidence: experimental ; unknown

Mature ppe-miR399k-3p

• Accession: MIMAT0031507
• Description: Prunus persica ppe-miR399k-3p mature miRNA
• Sequence: 93 - UGCCAAAGAAGAGUUGCCCUA - 113
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149