Stem-loop ppe-MIR403

Accession

MI0026135

Description

Prunus persica ppe-MIR403 precursor miRNA

Literature search

3 open access papers mention ppe-MIR403
(3 sentences)

Sequence

88048 reads, 2819.0 reads per million, 20 experiments

gggacacaucccCAGUUUGUGCGUGAAUCGAACcccaucacagccguccaucuuuaugaucacgauguuaacucaauccaauggugUUAGAUUCACGCACAAACUCGggauaugucuc
((((((.(((((.((((((((((((((((.(((.((((.(((..(((..(((.....))).))).)))............)))).))).)))))))))))))))).))))).))))))

Structure

      c     C                G   c    -----------c   gc   cc   u 
gggaca auccc AGUUUGUGCGUGAAUC AAC ccau            aca  cgu  auc u
|||||| ||||| |||||||||||||||| ||| ||||            |||  |||  ||| u
cucugu uaggG UCAAACACGCACUUAG UUg ggua            ugu  gca  uag a
      a     C                A   u    accuaacucaau   -a   -c   u 

Annotation confidence High

Genome context

chrG1: 9127091-9127208 [+]

Mature ppe-miR403-5p

• Accession: MIMAT0058561
• Description: Prunus persica ppe-miR403-5p mature miRNA
• Sequence: 13 - CAGUUUGUGCGUGAAUCGAAC - 33
• Evidence: experimental ; unknown

Mature ppe-miR403-3p

• Accession: MIMAT0031511
• Description: Prunus persica ppe-miR403-3p mature miRNA
• Sequence: 87 - UUAGAUUCACGCACAAACUCG - 107
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149