Stem-loop ppe-MIR482f

Accession

MI0026136

Description

Prunus persica ppe-MIR482f precursor miRNA

Literature search

2 open access papers mention ppe-MIR482f
(6 sentences)

Sequence

67304 reads, 7053.0 reads per million, 20 experiments

gguggggauaggAAGGGCUUGAGGAUGCUGUUGGagugggagagugggaaaagaauggaucucuuugguugguucaaagggaacaaauuUCUUUCCUACUCCACCCAUUCCugcaauuuccuuagguuucucccuuucccuuucc
((.(((((.(((.((((((((((((...(((.((((((((.((((((((((.((((.(.(((((((((.....))))))))).)..)))).))))))))))..)))))))).)))...)))))))).)))).))).)))))..))

Structure

  -u     u   A    -        UGC   U        -a          a    -g a         u 
gg  gggga agg AGGG CUUGAGGA   UGU GGaguggg  gagugggaaa gaau  g ucucuuugg u
||  ||||| ||| |||| ||||||||   ||| ||||||||  |||||||||| ||||  | ||||||||| g
cc  ucccu ucc ucuu ggauuccu   acg CCUUACCC  CUCAUCCUUU Uuua  c agggaaacu g
  uu     u   c    u        uua   u        AC          C    aa a         u 

Annotation confidence Medium

Genome context

chrG1: 30625526-30625670 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ppe-MIR482f

Mature ppe-miR482f-5p

• Accession: MIMAT0058562
• Description: Prunus persica ppe-miR482f-5p mature miRNA
• Sequence: 13 - AAGGGCUUGAGGAUGCUGUUGG - 34
• Evidence: experimental ; unknown

Mature ppe-miR482f-3p

• Accession: MIMAT0031512
• Description: Prunus persica ppe-miR482f-3p mature miRNA
• Sequence: 90 - UCUUUCCUACUCCACCCAUUCC - 111
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149