Stem-loop ppe-MIR530

Accession

MI0026137

Description

Prunus persica ppe-MIR530 precursor miRNA

Literature search

1 open access papers mention ppe-MIR530
(1 sentences)

Sequence

4902 reads, 1681.0 reads per million, 20 experiments

gauagccaagaugguuucauuuaUCUGCAUUUGCACCUGCACCUcuuuuggucuuuacugguuuucucaugcacugaugaacucagagauccaugcauAGGUGCAAGUGUAAGUGCAGAcaaaugccuucuugguuuuuuc
...((((((((.((...(((((.(((((((((((((.(((((((....((((((((...(((((..(((.....))).))))).))))).))).....))))))).))))))))))))).))))))).)))))))).....

Structure

--gau        u  uuu     a             C       -cuuu   -     acu     uc   u 
     agccaaga gg   cauuu UCUGCAUUUGCAC UGCACCU     ugg ucuuu   gguuu  uca g
     |||||||| ||   ||||| ||||||||||||| |||||||     ||| |||||   |||||  ||| c
     uugguucu cc   guaaa AGACGUGAAUGUG ACGUGGA     acc agaga   ucaag  agu a
cuuuu        u  ---     c             A       uacgu   u     --c     -u   c 

Annotation confidence High

Genome context

chrG7: 14976858-14976998 [-]

Mature ppe-miR530-5p

• Accession: MIMAT0031513
• Description: Prunus persica ppe-miR530-5p mature miRNA
• Sequence: 24 - UCUGCAUUUGCACCUGCACCU - 44
• Evidence: experimental ; Illumina [1]

Mature ppe-miR530-3p

• Accession: MIMAT0058563
• Description: Prunus persica ppe-miR530-3p mature miRNA
• Sequence: 99 - AGGUGCAAGUGUAAGUGCAGA - 119
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149