Stem-loop ppe-MIR535a

Accession

MI0026138

Description

Prunus persica ppe-MIR535a precursor miRNA

Literature search

2 open access papers mention ppe-MIR535a
(4 sentences)

Sequence

45295 reads, 811.0 reads per million, 20 experiments

ugauugacguuguuUGACAACGAGAGAGAGCACGCuugucggcacccaugaaagggccauggauguuuacgggcGUGCUCUCUCUUGUUGUCAUGcagucuauca
((((.(((..(((.(((((((((((((((((((((((((.((((.(((((.......))))).)))).))))))))))))))))))))))))).)))))).))))

Structure

    u   gu   u                         c    c     aa 
ugau gac  ugu UGACAACGAGAGAGAGCACGCuugu ggca ccaug  a
|||| |||  ||| ||||||||||||||||||||||||| |||| |||||  g
acua cug  acG ACUGUUGUUCUCUCUCGUGcgggca uugu gguac  g
    u   --   U                         u    a     cg 

Annotation confidence High

Genome context

chrG8: 18434050-18434154 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR535a

Mature ppe-miR535a-5p

• Accession: MIMAT0031514
• Description: Prunus persica ppe-miR535a-5p mature miRNA
• Sequence: 15 - UGACAACGAGAGAGAGCACGC - 35
• Evidence: experimental ; Illumina [1]

Mature ppe-miR535a-3p

• Accession: MIMAT0058564
• Description: Prunus persica ppe-miR535a-3p mature miRNA
• Sequence: 75 - GUGCUCUCUCUUGUUGUCAUG - 95
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149