Stem-loop ppe-MIR535b

Accession

MI0026139

Description

Prunus persica ppe-MIR535b precursor miRNA

Literature search

2 open access papers mention ppe-MIR535b
(4 sentences)

Sequence

203749 reads, 3477.0 reads per million, 20 experiments

gagccgagcuaugauugacguuguuUGACGACGAGAGAGAGCACGCuugucggcacccaugaaagggccauggauguuuacgggcGUGCUCUCUCUUGUUGUCAUacagucuaucugcugguucggauc
...((((((((.(((.(((..(((.(((((((((((((((((((((((((.((((.(((((.......))))).)))).))))))))))))))))))))))))).)))))).)))...))))))))...

Structure

gag        --u   u   gu   u                         c    c     aa 
   ccgagcua   gau gac  ugu UGACGACGAGAGAGAGCACGCuugu ggca ccaug  a
   ||||||||   ||| |||  ||| ||||||||||||||||||||||||| |||| |||||  g
   ggcuuggu   cua cug  aca ACUGUUGUUCUCUCUCGUGcgggca uugu gguac  g
cua        cgu   u   --   U                         u    a     cg 

Annotation confidence High

Genome context

chrG8: 18430310-18430438 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR535b

Mature ppe-miR535b-5p

• Accession: MIMAT0031515
• Description: Prunus persica ppe-miR535b-5p mature miRNA
• Sequence: 26 - UGACGACGAGAGAGAGCACGC - 46
• Evidence: experimental ; Illumina [1]

Mature ppe-miR535b-3p

• Accession: MIMAT0058565
• Description: Prunus persica ppe-miR535b-3p mature miRNA
• Sequence: 86 - GUGCUCUCUCUUGUUGUCAU - 105
• Evidence: experimental ; unknown

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149