Stem-loop ppe-MIR7122a

Accession

MI0026148

Description

Prunus persica ppe-MIR7122a precursor miRNA

Literature search

1 open access papers mention ppe-MIR7122a
(1 sentences)

Sequence

608030 reads, 16134.0 reads per million, 20 experiments

uucaucuuuugcaaaaucaaucgaucaaaggguucauuccauuuuuUUAUACAAUGAAAUCACGGccgagaaaagaacagaagauucuuucugacucucucucucuccucucugccguguuucuuugUAUAAAGAGAUGUACUGGACCcguucaauccuuuugauuugacagauugga
((((...((((..(((((((..(((..(((((((((...(((((((((((((((.((((.((((((.((((..(((..((((((.((.....)).))).))).)))..)))).)))))))))).)))))))))))))))...))))))).))..)))...)))))))..)))).))))

Structure

    ucu    ca       -uc   ca  -       uuc               U    U      c    aa   ac   -   u  u 
uuca   uuug  aaaucaa   gau  aa ggguuca   cauuuuuUUAUACAA GAAA CACGGc gaga  aga  aga aga uc u
||||   ||||  |||||||   |||  || |||||||   ||||||||||||||| |||| |||||| ||||  |||  ||| ||| || u
aggu   agac  uuuaguu   cua  uu cCCAGGU   GUAGAGAAAUAUguu cuuu gugccg cucu  ucu  ucu ucu ag c
    --u    ag       uuc   ac  g       CAU               u    -      u    cc   -c   c   c  u 

Annotation confidence Low

Genome context

chrG1: 2253872-2254049 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR7122a

Mature ppe-miR7122a-5p

• Accession: MIMAT0031527
• Description: Prunus persica ppe-miR7122a-5p mature miRNA
• Sequence: 47 - UUAUACAAUGAAAUCACGG - 65
• Evidence: experimental ; Illumina [1]

Mature ppe-miR7122a-3p

• Accession: MIMAT0031528
• Description: Prunus persica ppe-miR7122a-3p mature miRNA
• Sequence: 128 - UAUAAAGAGAUGUACUGGACC - 148
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149