Stem-loop ppe-MIR3627

Accession

MI0026152

Description

Prunus persica ppe-MIR3627 precursor miRNA

Literature search

2 open access papers mention ppe-MIR3627
(17 sentences)

Sequence

8566 reads, 195.0 reads per million, 19 experiments

aaguugagggauuuauguUCGCAGGAGAGAUGGCACUGUcuguggugcaacuagcuaccagcagaUGGUGUCAUCCCUCCUGUGACCagaaaacccuauaacuu
((((((((((.(((.((.(((((((((.((((((((((((((((((((.....)).)))).)))))))))))))).))))))))).)).))).)))).))))))

Structure

      -    a   a  u         A              -    -  a 
aaguug aggg uuu ug UCGCAGGAG GAUGGCACUGUcug uggu gc a
|||||| |||| ||| || ||||||||| |||||||||||||| |||| || c
uucaau uccc aaa aC AGUGUCCUC CUACUGUGGUagac acca cg u
      a    a   g  C         C              g    u  a 

Annotation confidence High

Genome context

chrG3: 25329223-25329326 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppe-MIR3627

Mature ppe-miR3627-5p

• Accession: MIMAT0031534
• Description: Prunus persica ppe-miR3627-5p mature miRNA
• Sequence: 19 - UCGCAGGAGAGAUGGCACUGU - 39
• Evidence: experimental ; Illumina [1]

Mature ppe-miR3627-3p

• Accession: MIMAT0031535
• Description: Prunus persica ppe-miR3627-3p mature miRNA
• Sequence: 66 - UGGUGUCAUCCCUCCUGUGACC - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149