Stem-loop ppe-MIR8133

Accession

MI0026167

Description

Prunus persica ppe-MIR8133 precursor miRNA

Literature search

1 open access papers mention ppe-MIR8133
(3 sentences)

Sequence

680 reads, 49.0 reads per million, 20 experiments

uauauauauacagauauucUCCUGUGCGAACGUCCAGAAGUuauuacuguacggacgccauguauuuucuaccacuccucccucauuuccucccuguuuacaauggcaucggcaugguaAUAACUUCCGAACGUCCGCAUAGGggaagaacugguauauaug
(((((((((.(((...((((((((((((.((((.(.((((((((((((((.(.((.((((((((..................................))).))))).)).).)))))))))))))).).)))).))))))))))))...))))))))))))

Structure

         a   aua            A    C A              a g  c     -   uuuucuaccacuccuc 
uauauauau cag   uucUCCUGUGCG ACGU C GAAGUuauuacugu c ga gccau gua                c
||||||||| |||   |||||||||||| |||| | |||||||||||||| | || ||||| |||                 
guauauaug guc   aaggGGAUACGC UGCA G CUUCAAUAauggua g cu cggua cau                c
         -   aag            C    A C              c g  a     a   uugucccuccuuuacu 

Annotation confidence Low

Genome context

chrG1: 498109-498270 [+]

Mature ppe-miR8133-5p

• Accession: MIMAT0031563
• Description: Prunus persica ppe-miR8133-5p mature miRNA
• Sequence: 20 - UCCUGUGCGAACGUCCAGAAGU - 41
• Evidence: experimental ; Illumina [1]

Mature ppe-miR8133-3p

• Accession: MIMAT0031564
• Description: Prunus persica ppe-miR8133-3p mature miRNA
• Sequence: 120 - AUAACUUCCGAACGUCCGCAUAGG - 143
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22909020
   Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
   Zhu H, Xia R, Zhao B, An YQ, Dardick CD, Callahan AM, Liu Z
   BMC Plant Biol (2012) 12:149