Stem-loop bbe-mir-190

Accession

MI0026193

Description

Branchiostoma belcheri bbe-mir-190 precursor miRNA

Literature search

1 open access papers mention bbe-mir-190
(2 sentences)

Sequence

106404 reads, 2051.0 reads per million, 16 experiments

gaaaccugugguguucugggUGAUAUGUUUGAUAUUUGGUUGuuaccuucacuccaACCAAUAUAUCGAACAUAUGAuccaaggccccauacacacagcca
......(((((.(((.(((((.((((((((((((((((((((............))))))).))))))))))))).))))).))).)))))..........

Structure

----gaaacc     u   c     G             -       uuacc 
          ugugg guu ugggU AUAUGUUUGAUAU UUGGUUG     u
          ||||| ||| ||||| ||||||||||||| |||||||      
          auacc cgg accuA UAUACAAGCUAUA AACCAac     u
accgacacac     c   a     G             U       cucac 

Annotation confidence High

Genome context

Unknown

Mature bbe-miR-190-5p

• Accession: MIMAT0031603
• Description: Branchiostoma belcheri bbe-miR-190-5p mature miRNA
• Sequence: 21 - UGAUAUGUUUGAUAUUUGGUUG - 42
• Evidence: not_experimental

Mature bbe-miR-190-3p

• Accession: MIMAT0031604
• Description: Branchiostoma belcheri bbe-miR-190-3p mature miRNA
• Sequence: 57 - ACCAAUAUAUCGAACAUAUGA - 77
• Evidence: not_experimental

References

1. PubMed ID: 23335747
   Genome-wide analyses of amphioxus microRNAs reveal an immune regulation via miR-92d targeting C3
   "Yang R, Zheng T, Cai X, Yu Y, Yu C, Guo L, Huang S, Zhu W, Zhu R, Yan Q, Ren Z, Chen S, Xu A"
   "J Immunol (2013) 190:1491-1500