Stem-loop bbe-mir-210

Accession

MI0026220

Description

Branchiostoma belcheri bbe-mir-210 precursor miRNA

Literature search

2 open access papers mention bbe-mir-210
(3 sentences)

Sequence

404388 reads, 5702.0 reads per million, 16 experiments

guaguuggucgguggcauuCGCCUCUGUUUCGCGCGCAAGAugugaugucaguccuucucCUGUGCGUGUGACAGCGGCUGAugcaccggccaaaaagucg
....((((((((((.((((.(((.(((((.(((((((((((.(.(((....)))).)))..)))))))).))))).))).)))))))))))))).......

Structure

---guag          g    C   U     U        --   u u   g 
       uuggucggug cauu GCC CUGUU CGCGCGCA  AGA g gau u
       |||||||||| |||| ||| ||||| ||||||||  ||| | |||  
       aaccggccac guAG CGG GACAG GUGCGUGU  ucu c cug c
gcugaaa          -    U   C     U        Cc   u -   a 

Annotation confidence High

Genome context

Unknown

Mature bbe-miR-210-5p

• Accession: MIMAT0031645
• Description: Branchiostoma belcheri bbe-miR-210-5p mature miRNA
• Sequence: 20 - CGCCUCUGUUUCGCGCGCAAGA - 41
• Evidence: not_experimental

Mature bbe-miR-210-3p

• Accession: MIMAT0031644
• Description: Branchiostoma belcheri bbe-miR-210-3p mature miRNA
• Sequence: 61 - CUGUGCGUGUGACAGCGGCUGA - 82
• Evidence: not_experimental

References

1. PubMed ID: 23335747
   Genome-wide analyses of amphioxus microRNAs reveal an immune regulation via miR-92d targeting C3
   "Yang R, Zheng T, Cai X, Yu Y, Yu C, Guo L, Huang S, Zhu W, Zhu R, Yan Q, Ren Z, Chen S, Xu A"
   "J Immunol (2013) 190:1491-1500