Stem-loop bbe-mir-242

Accession

MI0026226

Description

Branchiostoma belcheri bbe-mir-242 precursor miRNA

Sequence

6747 reads, 637.0 reads per million, 16 experiments

auggccucccaaguguUGCGUAGGCGUUGUGCACACUGUcugacacaacCGUGUGUACCUCUCCUGCCUaacauuuggacggcaug
...(((..((((((((((.(((((.(..((((((((.((........)).))))))))..).))))).))))))))))..)))...

Structure

aug   uc          C     C UU        U  cug 
   gcc  ccaaguguUG GUAGG G  GUGCACAC GU   a
   |||  |||||||||| ||||| |  |||||||| ||    
   cgg  gguuuacaaU CGUCC C  CAUGUGUG ca   c
gua   ca          C     U UC        C  aca 

Annotation confidence Medium

Genome context

Unknown

Mature bbe-miR-242-5p

• Accession: MIMAT0031654
• Description: Branchiostoma belcheri bbe-miR-242-5p mature miRNA
• Sequence: 17 - UGCGUAGGCGUUGUGCACACUGU - 39
• Evidence: not_experimental

Mature bbe-miR-242-3p

• Accession: MIMAT0058582
• Description: Branchiostoma belcheri bbe-miR-242-3p mature miRNA
• Sequence: 50 - CGUGUGUACCUCUCCUGCCU - 69
• Evidence: not_experimental

References

1. PubMed ID: 23335747
   Genome-wide analyses of amphioxus microRNAs reveal an immune regulation via miR-92d targeting C3
   "Yang R, Zheng T, Cai X, Yu Y, Yu C, Guo L, Huang S, Zhu W, Zhu R, Yan Q, Ren Z, Chen S, Xu A"
   "J Immunol (2013) 190:1491-1500