Stem-loop bbe-mir-252b

Accession

MI0026228

Description

Branchiostoma belcheri bbe-mir-252b precursor miRNA

Literature search

1 open access papers mention bbe-mir-252b
(2 sentences)

Sequence

85234 reads, 1196.0 reads per million, 16 experiments

gaaagcgacugucucugugCUAAGUAGUACUGCCGCAGGGAgugcugcggacugauucuaUCCCCUGCGCAGUCCUACUUACAacagggaacauuucuaau
((((.....(((((((((..(((((((.(((((.(((((((((.(...).))).........))))))))))).)))))))..)))))).)))))))....

Structure

----    gcgac   -      gC       U     C      ---------   g u 
    gaaa     ugu cucugu  UAAGUAG ACUGC GCAGGG         Agu c  
    ||||     ||| ||||||  ||||||| ||||| ||||||         ||| | g
    cuuu     aca gggaca  AUUCAUC UGACG CGUCCC         uca g  
uaau    -----   a      AC       C     -      CUaucuuag   g c 

Annotation confidence Medium

Genome context

Unknown

Mature bbe-miR-252b-5p

• Accession: MIMAT0031657
• Description: Branchiostoma belcheri bbe-miR-252b-5p mature miRNA
• Sequence: 20 - CUAAGUAGUACUGCCGCAGGGA - 41
• Evidence: not_experimental

Mature bbe-miR-252b-3p

• Accession: MIMAT0031658
• Description: Branchiostoma belcheri bbe-miR-252b-3p mature miRNA
• Sequence: 61 - UCCCCUGCGCAGUCCUACUUACA - 83
• Evidence: not_experimental

References

1. PubMed ID: 23335747
   Genome-wide analyses of amphioxus microRNAs reveal an immune regulation via miR-92d targeting C3
   "Yang R, Zheng T, Cai X, Yu Y, Yu C, Guo L, Huang S, Zhu W, Zhu R, Yan Q, Ren Z, Chen S, Xu A"
   "J Immunol (2013) 190:1491-1500