Stem-loop bbe-mir-31

Accession

MI0026233

Description

Branchiostoma belcheri bbe-mir-31 precursor miRNA

Literature search

1 open access papers mention bbe-mir-31
(3 sentences)

Sequence

1384487 reads, 10399.0 reads per million, 16 experiments

ugcagggggacgaggagaUGGCAAGAUGUUGGCAUAGCUGuuuacaguuucugguucgGCUGUGCUGACAAACUGCCGUUucccguucacccgauuacaac
....((((((((.((((((((((...((((((((((((((....(((...)))...))))))))))))))...))))))))))))))).))).........

Structure

-----ugca   -     a          AGA              uuua   u 
         ggg ggacg ggagaUGGCA   UGUUGGCAUAGCUG    cag  
         ||| ||||| ||||||||||   ||||||||||||||    ||| u
         ccc cuugc ccuUUGCCGU   ACAGUCGUGUCGgc    guc  
caacauuag   a     -          CAA              -uug   u 

Annotation confidence High

Genome context

Unknown

Mature bbe-miR-31-5p

• Accession: MIMAT0031666
• Description: Branchiostoma belcheri bbe-miR-31-5p mature miRNA
• Sequence: 19 - UGGCAAGAUGUUGGCAUAGCUG - 40
• Evidence: not_experimental

Mature bbe-miR-31-3p

• Accession: MIMAT0031667
• Description: Branchiostoma belcheri bbe-miR-31-3p mature miRNA
• Sequence: 59 - GCUGUGCUGACAAACUGCCGUU - 80
• Evidence: not_experimental

References

1. PubMed ID: 23335747
   Genome-wide analyses of amphioxus microRNAs reveal an immune regulation via miR-92d targeting C3
   "Yang R, Zheng T, Cai X, Yu Y, Yu C, Guo L, Huang S, Zhu W, Zhu R, Yan Q, Ren Z, Chen S, Xu A"
   "J Immunol (2013) 190:1491-1500