Stem-loop bbe-mir-92c

Accession

MI0026275

Description

Branchiostoma belcheri bbe-mir-92c precursor miRNA

Sequence

59929 reads, 1282.0 reads per million, 16 experiments

ugaauggauagggaggggguuuugauugaguguuuuuguaaaauuuagcgguuuuguuuuuggcgggaAGGUCGGGACAAGGAACAAUGUUccccacugaUAUUGCACUUGUCCCGGCUCGuccgcugccgccaucuugcuucaaacuugacuucggcacucuuuuuacuucaagccacccguucugcagccuuccucuuc
.(((.((.(((((.((((((((.((..(((((((((((.........(((((.........((((((..((((((((((((...(((((((.......)))))))..))))))))))))..)))))))))))..........)))).........)))))))........))))))).))).)))))...)))))......

Structure

-----u   u  --a     a   -     u  ------uu       ---------    -uaaaauuua     uuuguuuuu      aA            GAA       cc 
      gaa gg   uaggg ggg gguuu ga        gaguguu         uuug          gcggu         ggcggg  GGUCGGGACAAG   CAAUGUU  c
      ||| ||   ||||| ||| ||||| ||        |||||||         ||||          |||||         ||||||  ||||||||||||   |||||||  c
      cuu cc   gucuu ccc ccgaa cu        cucacgg         aaac          cgccg         ucgccu  UCGGCCCUGUUC   GUUAUag  a
cuucuc   -  gac     g   a     -  ucauuuuu       cuucaguuc    uucguucuac     ---------      GC            -AC       uc 

Annotation confidence High

Genome context

Unknown

Mature bbe-miR-92c-5p

• Accession: MIMAT0058596
• Description: Branchiostoma belcheri bbe-miR-92c-5p mature miRNA
• Sequence: 69 - AGGUCGGGACAAGGAACAAUGUU - 91
• Evidence: not_experimental

Mature bbe-miR-92c-3p

• Accession: MIMAT0031723
• Description: Branchiostoma belcheri bbe-miR-92c-3p mature miRNA
• Sequence: 101 - UAUUGCACUUGUCCCGGCUCG - 121
• Evidence: not_experimental

References

1. PubMed ID: 23335747
   Genome-wide analyses of amphioxus microRNAs reveal an immune regulation via miR-92d targeting C3
   "Yang R, Zheng T, Cai X, Yu Y, Yu C, Guo L, Huang S, Zhu W, Zhu R, Yan Q, Ren Z, Chen S, Xu A"
   "J Immunol (2013) 190:1491-1500