Stem-loop bma-mir-307

Accession

MI0026299

Description

Brugia malayi bma-mir-307 precursor miRNA

Sequence

49821 reads, 2133.0 reads per million, 25 experiments

cugaaaagguugcauggcguucAGCUUACUCAGCUGGUUGUAUGAUGuuauccggaauuccuucaguucaUCACAACCUCCUUGAGUAAGCGGAcugcuuucuuaaccuuucgucccc
.(((((.(((((...(((((((.((((((((((..((((((..((((......((....)).......))))))))))..).))))))))))))).)))....)))))))))).....

Structure

----c     a     -cau   -    A         - CU      AU    -uuaucc  a 
     ugaaa gguug    ggc guuc GCUUACUCA G  GGUUGU  GAUG       gg a
     ||||| |||||    ||| |||| ||||||||| |  ||||||  ||||       ||  
     gcuuu ccaau    ucg cAGG CGAAUGAGU C  CCAACA  CUac       cc u
ccccu     -     ucuu   u    -         U CU      --    uugacuu  u 

Annotation confidence High

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold22: 276999-277116 [+]

Mature bma-miR-307-5p

• Accession: MIMAT0057245
• Description: Brugia malayi bma-miR-307-5p mature miRNA
• Sequence: 23 - AGCUUACUCAGCUGGUUGUAUGAUG - 47
• Evidence: experimental ; Illumina [2]

Mature bma-miR-307-3p

• Accession: MIMAT0031748
• Description: Brugia malayi bma-miR-307-3p mature miRNA
• Sequence: 71 - UCACAACCUCCUUGAGUAAGCGGA - 94
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498