Stem-loop bma-mir-36a-1

Accession

MI0026300

Description

Brugia malayi bma-mir-36a-1 precursor miRNA

Literature search

1 open access papers mention bma-mir-36a-1
(9 sentences)

Sequence

33145 reads, 1502.0 reads per million, 23 experiments

auggugcuuCAGGAUGUGCAUCGUGGUUGAUGuaguuaaaauucucucaUCACCGGGUGCACAUUCGGUcauaccaucaug
((((((.....(((((((((((.((((.((((.((........))..))))))))))))))))))).....))))))....

Structure

----      cuuCA           G    U    -u  uua 
    auggug     GGAUGUGCAUC UGGU GAUG  ag   a
    ||||||     ||||||||||| |||| ||||  ||    
    uaccau     CUUACACGUGG GCCA CUac  uc   a
guac      acUGG           -    -    uc  uua 

Annotation confidence High

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold337: 15957-16037 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-36a-1

Mature bma-miR-36a-5p

• Accession: MIMAT0057246
• Description: Brugia malayi bma-miR-36a-5p mature miRNA
• Sequence: 10 - CAGGAUGUGCAUCGUGGUUGAUG - 32
• Evidence: experimental ; Illumina [2]

Mature bma-miR-36a-3p

• Accession: MIMAT0031749
• Description: Brugia malayi bma-miR-36a-3p mature miRNA
• Sequence: 50 - UCACCGGGUGCACAUUCGGU - 69
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498