Stem-loop bma-mir-5365a

Accession

MI0026311

Description

Brugia malayi bma-mir-5365a precursor miRNA

Sequence

uauuacagcaAAUUCGAUUGUGUUCUCUUAAUCAucacccacacuuauacgauuaagagaagacaaacgaaaaaauuguaauaa
((((((((....((((.((((.(((((((((((.................))))))))))).)))).))))....)))))))).

Structure

-        caAA    A    G           Aucaccc 
 uauuacag    UUCG UUGU UUCUCUUAAUC       a
 ||||||||    |||| |||| |||||||||||       c
 auaauguu    aagc aaca aagagaauuag       a
a        aaaa    a    g           cauauuc 

Annotation confidence Not enough data

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold33: 146573-146656 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-5365a

Mature bma-miR-5365a

• Accession: MIMAT0031756
• Description: Brugia malayi bma-miR-5365a mature miRNA
• Sequence: 11 - AAUUCGAUUGUGUUCUCUUAAUCA - 34
• Evidence: not_experimental

References

1. PubMed ID: 22216965
   Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
   Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
   BMC Genomics (2012) 13:4