miRBase entry: cpa-MIR156f

Stem-loop cpa-MIR156f


Accession
MI0026333
Description
Carica papaya cpa-MIR156f precursor miRNA

Literature search
2 open access papers mention cpa-MIR156f
(17 sentences)

Sequence

UUGACAGAAGAUAGAGAGCACagaugaugauaugcaauucauuaauggaucagaucaacucucugcaucucacuccuuugugcucucuaugcuucugucauca
.(((((((((((((((((((((((.(((((.((((((((((....))))).............))))).))).)).)))))))))))))).)))))))))...

Structure
--U         -              u  -   u     -------------     u 
   UGACAGAAG AUAGAGAGCACaga ga uga augca             auuca u
   ||||||||| |||||||||||||| || ||| |||||             |||||  
   acugucuuc uaucucucguguuu cu acu uacgu             uaggu a
acu         g              c  c   c     cucucaacuagac     a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cpa-miR156f

Accession MIMAT0031779
Description Carica papaya cpa-miR156f mature miRNA
Sequence 1 - UUGACAGAAGAUAGAGAGCAC - 21
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23216749
    Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
    Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
    BMC Genomics (2012) 13:682