Stem-loop cpa-MIR159b

Accession

MI0026335

Description

Carica papaya cpa-MIR159b precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

1 open access papers mention cpa-MIR159b
(1 sentences)

Sequence

agcucccuuugauccaauacuuggaaggagggagguuguaguacaucugauggcucauggauaccucugaguugcgcagauugaauuuacuuuggaggagcgugcagcuuaaggguuugcaugauucgagagaugugcuugccuucucuuuuccuuuCUUGGAUUGAAGGGAGCUCC
(((((((((((((((((.....((((((.(((((((...(((((((((..(((.(((((.(.((((.((((((((((...((.((......)).)).....)))))))))).)))).).))))).)))..))))))))).))))))).))))))....)))))))))))))))))..

Structure

--                 uacuu      a       ugu         ga   c     g u    c          --aga  g  uu 
  agcucccuuugauccaa     ggaagg gggaggu   aguacaucu  ugg ucaug a accu ugaguugcgc     uu aa  u
  |||||||||||||||||     |||||| |||||||   |||||||||  ||| ||||| | |||| ||||||||||     || ||   
  UCGAGGGAAGUUAGGUU     ccuuuu ucuuccg   ucguguaga  gcu aguac u uggg auucgacgug     ag uu  a
CC                 -Cuuu      c       --u         ga   u     g u    a          cgagg  g  uc 

Annotation confidence Not enough data

Genome context

Unknown

Mature cpa-miR159b

• Accession: MIMAT0031781
• Description: Carica papaya cpa-miR159b mature miRNA
• Sequence: 158 - CUUGGAUUGAAGGGAGCUCC - 177
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23216749
   Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
   Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
   BMC Genomics (2012) 13:682