Stem-loop cpa-MIR319

Accession

MI0026336

Description

Carica papaya cpa-MIR319 precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

1 open access papers mention cpa-MIR319
(1 sentences)

Sequence

agcuccuuucagcccaauacggaggacugagauguggguagagcugccaucucaugcauaaggcuaugcuuaauauuucucaaacagaaacuuccagucaucaaauuugagcugccaucuucaaggacuuaauguuaagcucaaccaaaugcauggagugggagcaacuccuuccccauacuuugcccgcccAUUGGACUGAAGGGAGCUCC
((((((((((((.(((((..((.((.(.(((.((((((.((.(((.((((.((((((((..((....((((((((((.........(((.....((((..(((....))))))).....)))........))))))))))....))..)))))))).)))).))).....))..))))))))).).)).)).))))).))))))))))))..

Structure

--            c     ac  a  a u   a      -u  ----a   g    c        aa  cuau          ucucaaaca   acuuc    ca   a 
  agcuccuuucag ccaau  gg gg c gag uguggg  ag     gcu ccau ucaugcau  gg    gcuuaauauu         gaa     cagu  uca a
  |||||||||||| |||||  || || | ||| ||||||  ||     ||| |||| ||||||||  ||    ||||||||||         |||     ||||  |||  
  UCGAGGGAAGUC GGUUA  cc cc g uuc auaccc  uc     cga ggug gguacgua  cc    cgaauuguaa         cuu     gucg  agu u
CC            A     -c  g  c u   -      cu  cucaa   g    a        aa  aacu          -uucaggaa   cuacc    --   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature cpa-miR319

• Accession: MIMAT0031782
• Description: Carica papaya cpa-miR319 mature miRNA
• Sequence: 193 - AUUGGACUGAAGGGAGCUCC - 212
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23216749
   Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
   Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
   BMC Genomics (2012) 13:682