Stem-loop cpa-MIR169

Accession

MI0026357

Description

Carica papaya cpa-MIR169 precursor miRNA

Literature search

1 open access papers mention cpa-MIR169
(8 sentences)

Sequence

CAGCCAAGAAUGACUUGCCGacucuucuauuguccuugcuauucucuggcgaugacucacagaguuuuaccaaauuggcaagucguccuuggcuaca
.(((((((.((((((((((((((((......(((.((((((.....)))))).)))....))))))..........)))))))))).)))))))...

Structure

--C       A          ----------      ucuauu   c      u 
   AGCCAAG AUGACUUGCC          Gacucu      guc uugcua u
   ||||||| ||||||||||          ||||||      ||| |||||| c
   ucgguuc ugcugaacgg          uugaga      cag agcggu u
aca       c          uuaaaccauu      --cacu   u      c 

Annotation confidence Not enough data

Genome context

Unknown

Mature cpa-miR169

• Accession: MIMAT0031805
• Description: Carica papaya cpa-miR169 mature miRNA
• Sequence: 1 - CAGCCAAGAAUGACUUGCCG - 20
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23216749
   Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
   Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
   BMC Genomics (2012) 13:682