Stem-loop cpa-MIR172a

Accession

MI0026362

Description

Carica papaya cpa-MIR172a precursor miRNA

Literature search

2 open access papers mention cpa-MIR172a
(7 sentences)

Sequence

gagcaucaucaagauucacaaaauuaaacacauuagggcuaguagugugggguuugugguggugggugacggugauggccccuucugcucuuuuuuuuuucaguggucccguugcuuauuucacugcaacacccuuggcucucucucuuugauuauGGGAAUCUUGAUGAUGCUGCA
.((((((((((((((((.((.(((((((......(((((((.......((((((((((((((((((((((((.(((.((.......................)).))))))))))))))..)))))))).)))))))))))).....))))))).)).))))))))))))))))...

Structure

--g                a  a       cacauu       guagugu     -        --           u   g  cccuucugcu 
   agcaucaucaagauuc ca aauuaaa      agggcua       ggggu uuguggug  gugggugacgg gau gc          c
   |||||||||||||||| || |||||||      |||||||       ||||| ||||||||  ||||||||||| ||| ||          u
   UCGUAGUAGUUCUAAG Gu uuaguuu      ucucggu       uccca aacgucac  uauucguugcc cug ug          u
ACG                G  a       -cucuc       -------     c        uu           -   g  acuuuuuuuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature cpa-miR172a

• Accession: MIMAT0031810
• Description: Carica papaya cpa-miR172a mature miRNA
• Sequence: 157 - GGGAAUCUUGAUGAUGCUGCA - 177
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23216749
   Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
   Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
   BMC Genomics (2012) 13:682