Stem-loop cpa-MIR393

Accession

MI0026366

Description

Carica papaya cpa-MIR393 precursor miRNA

Literature search

2 open access papers mention cpa-MIR393
(4 sentences)

Sequence

UCCAAAGGGAUCGCAUUGAUCCuuuacaaggugaaagcaaucuauauauauauauguguguguguguauauaagucugucuccuguauauauagaguuuaggaucaugcuaucccuuuggauu
(((((((((((.((((.((((((..((.(((.((.((..((.(((((((((((((....))))))))))))).)))).)).)))...........))..)))))))))).)))))))))))..

Structure

--           C    U      uu  ----------a   u  a  ca  c             g 
  UCCAAAGGGAU GCAU GAUCCu  ac           agg ga ag  au uauauauauauau u
  ||||||||||| |||| ||||||  ||           ||| || ||  || |||||||||||||  
  agguuucccua cgua cuagga  ug           ucc cu uc  ug auauaugugugug g
uu           u    -      uu  agauauauaug   u  g  --  a             u 

Annotation confidence Not enough data

Genome context

Unknown

Mature cpa-miR393

• Accession: MIMAT0031814
• Description: Carica papaya cpa-miR393 mature miRNA
• Sequence: 1 - UCCAAAGGGAUCGCAUUGAUCC - 22
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23216749
   Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya
   Aryal R, Yang X, Yu Q, Sunkar R, Li L, Ming R
   BMC Genomics (2012) 13:682