Stem-loop ssa-let-7j

Accession

MI0026422

Description

Salmo salar ssa-let-7j precursor miRNA

Literature search

2 open access papers mention ssa-let-7j
(5 sentences)

Sequence

UGAGGUAGUAGGUUGGAUAGUUuuagggucacacccacacugggagauaaCUGUACAACCUACUGUCUUUCU
.((((((((((((((.((((((.....(((...((((...)))).))))))))).))))))))))))))...

Structure

--U              G      uuagg   aca    c 
   GAGGUAGUAGGUUG AUAGUU     guc   ccca  
   |||||||||||||| ||||||     |||   |||| a
   UUCUGUCAUCCAAC UGUCaa     uag   gggu  
UCU              A      -----   --a    c 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-let-7j-5p

• Accession: MIMAT0032263
• Description: Salmo salar ssa-let-7j-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGGAUAGUU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-let-7j-3p

• Accession: MIMAT0032264
• Description: Salmo salar ssa-let-7j-3p mature miRNA
• Sequence: 51 - CUGUACAACCUACUGUCUUUCU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482