Stem-loop ssa-let-7c-1

Accession

MI0026423

Description

Salmo salar ssa-let-7c-1 precursor miRNA

Literature search

2 open access papers mention ssa-let-7c-1
(5 sentences)

Sequence

UGAGGUAGUAGGUUGUAUGGUUuagaaugacacccuaggaguuaaCUGUACAACCUUCUAGCUUUCC
.(((.(((.(((((((((((((...(((..(......)..)))))))))))))))).))).)))...

Structure

--U   G   U             uag   ga ac 
   GAG UAG AGGUUGUAUGGUU   aau  c  c
   ||| ||| |||||||||||||   |||  |   
   UUC AUC UCCAACAUGUCaa   uug  g  c
CCU   G   U             ---   ag au 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-let-7c-5p

• Accession: MIMAT0032265
• Description: Salmo salar ssa-let-7c-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUGGUU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-let-7c-3p

• Accession: MIMAT0032266
• Description: Salmo salar ssa-let-7c-3p mature miRNA
• Sequence: 46 - CUGUACAACCUUCUAGCUUUCC - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482