Stem-loop ssa-let-7c-2

Accession

MI0026424

Description

Salmo salar ssa-let-7c-2 precursor miRNA

Literature search

2 open access papers mention ssa-let-7c-2
(5 sentences)

Sequence

UGAGGUAGUAGGUUGUAUGGUUuagaaugacacccugggaguuaaCGGUACAACCUUCUAGCUUUCCU
.(((.(((.(((((((((.(((...(((..(......)..)))))).))))))))).))).)))....

Structure

---U   G   U         G   uag   ga ac 
    GAG UAG AGGUUGUAU GUU   aau  c  c
    ||| ||| ||||||||| |||   |||  |   
    UUC AUC UCCAACAUG Caa   uug  g  c
UCCU   G   U         G   ---   ag gu 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-let-7c-5p

• Accession: MIMAT0032265
• Description: Salmo salar ssa-let-7c-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGGUUGUAUGGUU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-let-7c-2-3p

• Accession: MIMAT0032267
• Description: Salmo salar ssa-let-7c-2-3p mature miRNA
• Sequence: 46 - CGGUACAACCUUCUAGCUUUCCU - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482