Stem-loop ssa-let-7f

Accession

MI0026425

Description

Salmo salar ssa-let-7f precursor miRNA

Literature search

2 open access papers mention ssa-let-7f
(6 sentences)

Sequence

774900 reads, 3229.0 reads per million, 87 experiments

UGAGGUAGUAGAUUGUAUUGUUgugggguagugauuuuacccugaucagaagauaaCUAUACAAUCUAUUGCCUUCCc
.(((((((((((((((((.((((((((((((.....))))))).........))))).)))))))))))))))))...

Structure

--U                 U     ---------       u 
   GAGGUAGUAGAUUGUAU GUUgu         gggguag g
   ||||||||||||||||| |||||         ||||||| a
   UUCCGUUAUCUAACAUA Caaua         ucccauu u
cCC                 U     gaagacuag       u 

Annotation confidence High

Genome context

Unknown

Mature ssa-let-7f-5p

• Accession: MIMAT0032268
• Description: Salmo salar ssa-let-7f-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGAUUGUAUUGUU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-let-7f-3p

• Accession: MIMAT0032269
• Description: Salmo salar ssa-let-7f-3p mature miRNA
• Sequence: 57 - CUAUACAAUCUAUUGCCUUCC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482