Stem-loop ssa-let-7i-1

Accession

MI0026429

Description

Salmo salar ssa-let-7i-1 precursor miRNA

Literature search

2 open access papers mention ssa-let-7i-1
(5 sentences)

Sequence

UGAGGUAGUAGUUUGUGCUGUUggucggguugugacauggccugcuguggagauaaCUGCGCAAACGACUACCUUGCC
.((((((((.((((((((.(((((.((((((((...))))))))))........))).)))))))).))))))))...

Structure

--U        A        U   --------  u        g 
   GAGGUAGU GUUUGUGC GUU        gg cggguugu  
   |||||||| |||||||| |||        || |||||||| a
   UUCCAUCA CAAACGCG Caa        uc guccggua  
CCG        G        U   uagaggug  -        c 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-let-7i-5p

• Accession: MIMAT0032274
• Description: Salmo salar ssa-let-7i-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGUUUGUGCUGUU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-let-7i-3p

• Accession: MIMAT0032275
• Description: Salmo salar ssa-let-7i-3p mature miRNA
• Sequence: 57 - CUGCGCAAACGACUACCUUGCC - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482