Stem-loop ssa-let-7i-2

Accession

MI0026430

Description

Salmo salar ssa-let-7i-2 precursor miRNA

Literature search

2 open access papers mention ssa-let-7i-2
(6 sentences)

Sequence

2342234 reads, 10485.0 reads per million, 87 experiments

UGAGGUAGUAGUUUGUGCUGUUgguuggguuaugacauuucccgcuauggagaugaCUGCGCAAGCUACUGCCUUGCc
.(((((((((((((((((.((..............(((((((......))))))))).)))))))))))))))))...

Structure

--U                 U  Ugguuggguuauga       cg 
   GAGGUAGUAGUUUGUGC GU              cauuucc  c
   ||||||||||||||||| ||              |||||||   
   UUCCGUCAUCGAACGCG Ca              guagagg  u
cCG                 U  --------------       ua 

Annotation confidence High

Genome context

Unknown

Mature ssa-let-7i-5p

• Accession: MIMAT0032274
• Description: Salmo salar ssa-let-7i-5p mature miRNA
• Sequence: 1 - UGAGGUAGUAGUUUGUGCUGUU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-let-7i-2-3p

• Accession: MIMAT0032276
• Description: Salmo salar ssa-let-7i-2-3p mature miRNA
• Sequence: 57 - CUGCGCAAGCUACUGCCUUGC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482