Stem-loop ssa-mir-10a-1

Accession

MI0026442

Description

Salmo salar ssa-mir-10a-1 precursor miRNA

Literature search

2 open access papers mention ssa-mir-10a-1
(7 sentences)

Sequence

UACCCUGUAGAUCCGGAUUUGUgugaacagacucacggucaCAAAUUCGUGUCUAAGGGAGU
..((((.(((((.(((((((((((((......))))....))))))))).)))))))))...

Structure

-UA    G     C         ----    ac 
   CCCU UAGAU CGGAUUUGU    guga  a
   |||| ||||| |||||||||    ||||   
   GGGA AUCUG GCUUAAACa    cacu  g
UGA    -     U         cugg    ca 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-10a-5p

• Accession: MIMAT0032292
• Description: Salmo salar ssa-miR-10a-5p mature miRNA
• Sequence: 1 - UACCCUGUAGAUCCGGAUUUGU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-10a-3p

• Accession: MIMAT0032293
• Description: Salmo salar ssa-miR-10a-3p mature miRNA
• Sequence: 42 - CAAAUUCGUGUCUAAGGGAGU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482