Stem-loop ssa-mir-10b-1

Accession

MI0026444

Description

Salmo salar ssa-mir-10b-1 precursor miRNA

Literature search

2 open access papers mention ssa-mir-10b-1
(9 sentences)

Sequence

UACCCUGUAGAACCGAAUUUGUguuaauagauaacaaucgCAAGUACGUCUCUACAGGAAUA
...((((((((..((.(((((((...............))))))).))..))))))))....

Structure

-UAC        AC  A       uuaaua 
    CCUGUAGA  CG AUUUGUg      g
    ||||||||  || |||||||      a
    GGACAUCU  GC UGAACgc      u
AUAA        CU  A       uaacaa 

Annotation confidence Not enough data

Genome context

Unknown

Mature ssa-miR-10b-5p

• Accession: MIMAT0032295
• Description: Salmo salar ssa-miR-10b-5p mature miRNA
• Sequence: 1 - UACCCUGUAGAACCGAAUUUGU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-10b-3p

• Accession: MIMAT0032296
• Description: Salmo salar ssa-miR-10b-3p mature miRNA
• Sequence: 41 - CAAGUACGUCUCUACAGGAAUA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482