Stem-loop ssa-mir-10b-3

Accession

MI0026446

Description

Salmo salar ssa-mir-10b-3 precursor miRNA

Literature search

2 open access papers mention ssa-mir-10b-3
(9 sentences)

Sequence

2612624 reads, 7578.0 reads per million, 87 experiments

UACCCUGUAGAACCGAAUUUGUgugauaaaacaacagucaCAGAUUCGAUUCUAGGGGAGU
...(((.(((((.((((((((((...............)))))))))).))))).)))...

Structure

UAC   G     C          ugauaa 
   CCU UAGAA CGAAUUUGUg      a
   ||| ||||| ||||||||||      a
   GGG AUCUU GCUUAGACac      c
UGA   G     A          ugacaa 

Annotation confidence Medium

Genome context

Unknown

Mature ssa-miR-10b-5p

• Accession: MIMAT0032295
• Description: Salmo salar ssa-miR-10b-5p mature miRNA
• Sequence: 1 - UACCCUGUAGAACCGAAUUUGU - 22
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-10b-3-3p

• Accession: MIMAT0032298
• Description: Salmo salar ssa-miR-10b-3-3p mature miRNA
• Sequence: 41 - CAGAUUCGAUUCUAGGGGAGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482