Stem-loop ssa-mir-10d-1

Accession

MI0026448

Description

Salmo salar ssa-mir-10d-1 precursor miRNA

Literature search

2 open access papers mention ssa-mir-10d-1
(6 sentences)

Sequence

766195 reads, 2176.0 reads per million, 87 experiments

cACCCUGUAGAACCGAAUUUGUGuuuacaauuaacaacCGCAAAUUCGCCUCUACGGGA
...((((((((..((((((((((...............))))))))))..)))))))).

Structure

cAC        AC          uuuaca 
   CCUGUAGA  CGAAUUUGUG      a
   ||||||||  ||||||||||      u
   GGGCAUCU  GCUUAAACGC      u
--A        CC          caacaa 

Annotation confidence Medium

Genome context

Unknown

Mature ssa-miR-10d-5p

• Accession: MIMAT0032299
• Description: Salmo salar ssa-miR-10d-5p mature miRNA
• Sequence: 2 - ACCCUGUAGAACCGAAUUUGUG - 23
• Evidence: experimental ; Illumina [1]

Mature ssa-miR-10d-3p

• Accession: MIMAT0032300
• Description: Salmo salar ssa-miR-10d-3p mature miRNA
• Sequence: 39 - CGCAAAUUCGCCUCUACGGGA - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23865519
   Discovery and characterization of miRNA genes in Atlantic salmon (Salmo salar) by use of a deep sequencing approach
   Andreassen R, Worren MM, Høyheim B
   BMC Genomics (2013) 14:482